PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475707.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 491aa    MW: 55365.5 Da    PI: 6.4384
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475707.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.9e-1589179199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k ++ps+v+   +l +pkkf+ ++ ++k+ + t++l de+ +++  k+ ++k++    l++GW++F  a+ L  gD+++F+l++  +f  +v 
  XP_016475707.1  89 FVKYMLPSHVTGGFWLGFPKKFC-DYHLPKR-DDTVVLVDEDEQEYATKYLVDKTG----LSGGWRGFSIAHSLVHGDVLIFQLIQLCKF--KVY 175
                     8999*******************.6656664.55****************888888....************************998888..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  XP_016475707.1 176 IIRE 179
                     8875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-2283179IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-1983180IPR015300DNA-binding pseudobarrel domain
CDDcd100174.00E-2587178No hitNo description
PROSITE profilePS5086311.6689180IPR003340B3 DNA binding domain
SMARTSM010198.9E-2089180IPR003340B3 DNA binding domain
PfamPF023621.3E-1389179IPR003340B3 DNA binding domain
PfamPF052669.5E-10370473IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MAISAMYSSK KSPLLSSSKK KALEIKKKLL RKRALGPCNT YKGKNGDNKK VQIRPEKKVN  60
KPSTVDANSS AMLRAEEVQA NLPSQFPSFV KYMLPSHVTG GFWLGFPKKF CDYHLPKRDD  120
TVVLVDEDEQ EYATKYLVDK TGLSGGWRGF SIAHSLVHGD VLIFQLIQLC KFKVYIIRES  180
TLAELDGAIS LLNLDFHAKP IKSEICEAKE QKYLEPPVLD THQDDKQEID GAISLLKLDF  240
RARPIISDQD EEMKICEAKE EKYLEPSVID IDQDDQNVEA MLLKNSDQGP ASDQCGNNSD  300
NSSEVLGIRF SESRLEFKDM KVFSGFNILI DSLIIDSEIP AHIRTKYYEL CCTQKSFLHD  360
HLLGGLNCKL AAGMITETVN IADAIRASNI STSRDYLETW NSTLKGFECL GMEVGFLRAR  420
LNKLVSLSSE SQQILESKRN ELAEAKEEMR NLETKLLKVK QVIKNLDSEI ELTTKDTSFE  480
IKYKALAAVP W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475707.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLK4C4N80.0K4C4N8_SOLLC; Uncharacterized protein
STRINGSolyc06g034140.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-42B3 family protein